Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRR9851824

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Pteromalus puparum (parasitoid wasp) bulk miRNA-Seq dataset from the Illumina HiSeq 2500 platform generated 14.6 million short reads (728.4 million bases) with excellent quality (98.1% Q20, 96.3% Q30 bytes, 0.001% N content). The miRNA-specific sequencing approach enables discovery of small regulatory RNAs in this parasitoid beneficial insect. Search terms: miRNA-Seq, HiSeq 2500, parasitoid transcriptomics, insect regulatory RNAs, all highly relevant to gene regulation studies.

Data type / assay
bulk-RNA-seq
Organism
Pteromalus puparum
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 728425500 reported
total reads 14568510 reported
n content pct 0.001 measured
pct q20 bases 98.1 measured
pct q30 bases 96.3 measured
gc content pct 52.4 measured
mean read length 50 measured
mean base quality 37.7 measured
adapter content pct 90.42 measured
duplication rate pct 72.22 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.3 measured ×1 100%
mean base quality 37.7 measured ×0.6 100%
adapter content pct 90.42 measured ×0.4 0%
duplication rate pct 72.22 measured ×0.4 6%
QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0