Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR9900941

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Helicoverpa armigera (cotton bollworm) bulk RNA-Seq dataset was sequenced on the BGISEQ-500 platform, producing 62.3 million short reads (6.23 billion bases) with very high quality (97.9% Q20, 90.2% Q30 bases, zero N content). The dataset offers comprehensive transcriptome profiling of an agricultural pest insect and is searchable by BGISEQ platform, insect transcriptomics, and Lepidoptera gene expression. The exceptional read depth and quality make it well-suited for differential expression studies and transcript assembly.

Data type / assay
bulk-RNA-seq
Organism
Helicoverpa armigera
Instrument
BGISEQ-500
Platform
BGISEQ
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 6231738800 reported
total reads 62317388 reported
n content pct 0 measured
pct q20 bases 97.9 measured
pct q30 bases 90.2 measured
gc content pct 49.7 measured
mean read length 100 measured
mean base quality 34.9 measured
adapter content pct 0 measured
duplication rate pct 46.33 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.2 measured ×1 100%
mean base quality 34.9 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 46.33 measured ×0.4 64%
QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0