Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR9942943

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

90/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Homalodisca vitripennis (glassy-winged sharpshooter) bulk RNA-Seq dataset from the Illumina HiSeq 4000 platform contains 23.4 million short reads (4.73 billion bases) with outstanding quality (98.7% Q20, 95.8% Q30 bytes, 0.004% N content). The high-quality reads enable sensitive expression profiling of this agricultural pest insect vector of plant pathogens. Search terms: hemipteran transcriptomics, HiSeq 4000, vector biology, disease vector genomics, supporting studies of host-pathogen interactions.

Data type / assay
bulk-RNA-seq
Organism
Homalodisca vitripennis
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4734180878 reported
total reads 23436539 reported
n content pct 0.004 measured
pct q20 bases 98.7 measured
pct q30 bases 95.8 measured
gc content pct 44.6 measured
mean read length 101 measured
mean base quality 39.3 measured
adapter content pct 0.04 measured
duplication rate pct 55.72 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 90/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.8 measured ×1 100%
mean base quality 39.3 measured ×0.6 100%
adapter content pct 0.04 measured ×0.4 100%
duplication rate pct 55.72 measured ×0.4 43%
QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0