Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR9984198

ENA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Propionibacteriaceae bacterium WGS dataset from the Illumina HiSeq 2000 platform contains only 26 reads (1.88 million bases) with zero quality metrics (0% Q20, 0% Q30 bytes), representing extreme undersequencing. The insufficient read count and absent quality data make this dataset unsuitable for genomic analysis. Search terms: bacterial WGS, undersequenced, data quality validation, illustrating critical importance of adequate sequencing depth.

Data type / assay
WGS
Organism
Propionibacteriaceae bacterium
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1875921 reported
total reads 26 reported
n content pct 0 measured
pct q20 bases 0 measured
pct q30 bases 0 measured
gc content pct 53.7 measured
mean read length 72150.8 measured
mean base quality 9 measured
adapter content pct 0 measured
duplication rate pct 7.69 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 0 measured ×1 0%
duplication rate pct 7.69 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0