Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR9987839

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Anopheles gambiae (malaria mosquito) bulk RNA-Seq dataset on the Illumina HiSeq 2500 platform contains 82.6 million short reads (16.68 billion bases) with exceptional quality (97.2% Q20, 94.2% Q30 bases, 0.003% N content). The depth and quality support comprehensive transcriptome studies of this medically important vector species, searchable by vector biology, HiSeq 2500 transcriptomics, and insect pathogenesis. The high-quality profile is well-suited for regulatory element discovery and tissue-specific expression mapping.

Data type / assay
bulk-RNA-seq
Organism
Anopheles gambiae
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 16684846904 reported
total reads 82598252 reported
n content pct 0.003 measured
pct q20 bases 97.2 measured
pct q30 bases 94.2 measured
gc content pct 51.3 measured
mean read length 101 measured
mean base quality 36.3 measured
adapter content pct 1.42 measured
duplication rate pct 33.06 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.2 measured ×1 100%
mean base quality 36.3 measured ×0.6 100%
adapter content pct 1.42 measured ×0.4 100%
duplication rate pct 33.06 measured ×0.4 93%
QC cost 37 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0