SRS7176970

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

95/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Human RNA-seq from Illumina NovaSeq 6000 with moderate depth (37.7M reads) and acceptable quality (93% Q20) despite the platform's typically higher error rates. Data is suitable for standard transcriptome-wide expression studies but requires careful filtering if sensitive isoform detection is needed.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 4646726740 reported

total reads 37722182 reported

n content pct 0.005 measured

pct q20 bases 93 measured

pct q30 bases 88.6 measured

gc content pct 50.8 measured

mean read length 122.6 measured

mean base quality 33.5 measured

adapter content pct 0.52 measured

duplication rate pct 30.75 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 95/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.6 measured ×1 93%

mean base quality 33.5 measured ×0.6 92%

adapter content pct 0.52 measured ×0.4 100%

duplication rate pct 30.75 measured ×0.4 98%

QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0