Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX001829

ENA first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

36/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Homo sapiens WES (whole-exome sequencing) dataset from the 454 GS FLX platform contains 2.79 million long reads (1.56 billion bases) with moderate quality (81.6% Q20, 49.6% Q30 bytes). The 454 long-read approach provides partial capture of human coding sequences. Search terms: human exome sequencing, WXS, 454 long-read, clinical genomics, variant discovery, applicable to disease-gene identification though less efficient than modern exome methods.

Data type / assay
WES
Organism
Homo sapiens
Instrument
454 GS FLX
Platform
LS454
Files available
FASTQ (raw reads)
N numbers (samples, groups)
2 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1563189870 reported
total reads 2791443 reported
n content pct 0.046 measured
pct q20 bases 81.6 measured
pct q30 bases 49.6 measured
gc content pct 42.9 measured
mean read length 353.1 measured
mean base quality 27.5 measured
adapter content pct 0 measured
duplication rate pct 8.24 measured
mean target coverage 25.2 extrapolated
How this grade was computed
Weighted mean of 4 scored metric(s) → 36/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 25.2 extrapolated ×1.2 17%
pct q30 bases 49.6 measured ×1 0%
duplication rate pct 8.24 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 34 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0