Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX005977

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

62/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This D. melanogaster WGS dataset from the Illumina Genome Analyzer platform contains 36.3 million reads (5.02 billion bases) with high extrapolated coverage (35.9×) and good quality (86.1% Q20, 66% Q30 bytes). The substantial read count enables sensitive variant discovery across the Drosophila genome. Search terms: medium-depth Drosophila WGS, Genome Analyzer, population genomics, resequencing, supporting SNP mapping and comparative genomic analyses.

Data type / assay
WGS
Organism
Drosophila melanogaster
Instrument
Illumina Genome Analyzer
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5021999438 reported
total reads 36339936 reported
mean coverage 35.9 extrapolated
n content pct 0.093 measured
pct q20 bases 86.1 measured
pct q30 bases 66 measured
gc content pct 42.1 measured
mean read length 69.2 measured
mean base quality 28.4 measured
adapter content pct 0 measured
duplication rate pct 20.28 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 62/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 35.9 extrapolated ×1.2 100%
pct q30 bases 66 measured ×1 0%
duplication rate pct 20.28 measured ×0.5 62%
adapter content pct 0 measured ×0.4 100%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0