Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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SRX005978

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This D. melanogaster WGS dataset from the Illumina Genome Analyzer platform contains 73.6 million reads (14.04 billion bases) with very high extrapolated coverage (100.3×) and excellent quality (89.2% Q20, 77.4% Q30 bytes). The extremely deep coverage from this classic platform enables comprehensive variant discovery. Search terms: ultra-deep-coverage Drosophila WGS, Genome Analyzer, genome assembly, structural variant discovery, representing an exceptional genomic resource.

Data type / assay
WGS
Organism
Drosophila melanogaster
Instrument
Illumina Genome Analyzer
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 14036638228 reported
total reads 73550352 reported
mean coverage 100.3 extrapolated
n content pct 0.013 measured
pct q20 bases 89.2 measured
pct q30 bases 77.4 measured
gc content pct 40.3 measured
mean read length 96 measured
mean base quality 31.8 measured
adapter content pct 0.01 measured
duplication rate pct 31.04 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 100.3 extrapolated ×1.2 100%
pct q30 bases 77.4 measured ×1 37%
duplication rate pct 31.04 measured ×0.5 28%
adapter content pct 0.01 measured ×0.4 100%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0