Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

SRX005986

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

55/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This D. melanogaster WGS dataset from the Illumina Genome Analyzer platform contains 161.6 million reads (29.49 billion bases) with extraordinarily high extrapolated coverage (210.6×) and excellent quality (81.7% Q20, 72% Q30 bases). The ultra-deep coverage from this classic platform supports highly sensitive variant discovery, copy number analysis, and comparative genomics. This dataset is exceptional for Drosophila sequencing depth and represents a major resource, searchable by deep WGS, Genome Analyzer, and population-level studies.

Data type / assay
WGS
Organism
Drosophila melanogaster
Instrument
Illumina Genome Analyzer
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 29486219138 reported
total reads 161621929 reported
mean coverage 210.6 extrapolated
n content pct 0.64 measured
pct q20 bases 81.7 measured
pct q30 bases 72 measured
gc content pct 37.2 measured
mean read length 92.3 measured
mean base quality 29.2 measured
adapter content pct 0.01 measured
duplication rate pct 46.59 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 55/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 210.6 extrapolated ×1.2 100%
pct q30 bases 72 measured ×1 10%
duplication rate pct 46.59 measured ×0.5 0%
adapter content pct 0.01 measured ×0.4 100%
QC cost 36 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0