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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
33/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Arabidopsis thaliana
Instrument
Illumina Genome Analyzer
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
4 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
1853916264
reported
total reads
51497674
reported
n content pct
1.089
measured
pct q20 bases
40.8
measured
pct q30 bases
33.4
measured
gc content pct
49.6
measured
mean read length
36
measured
mean base quality
18.6
measured
adapter content pct
0.02
measured
duplication rate pct
8.31
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 33/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
33.4
measured
×1
0%
mean base quality
18.6
measured
×0.6
0%
adapter content pct
0.02
measured
×0.4
100%
duplication rate pct
8.31
measured
×0.4
100%
QC cost
34 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0