SRX015525

ENA first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

73/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Salpingoeca rosetta

Instrument

454 GS FLX Titanium

Platform

LS454

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 154478585 reported

total reads 300334 reported

n content pct 0.031 measured

pct q20 bases 93.4 measured

pct q30 bases 80.9 measured

gc content pct 54.1 measured

mean read length 340.9 measured

mean base quality 35 measured

adapter content pct 0 measured

duplication rate pct 11.35 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 73/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 80.9 measured ×1 55%

duplication rate pct 11.35 measured ×0.5 90%

adapter content pct 0 measured ×0.4 100%

QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0