Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRX016370

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Homo sapiens bulk EST dataset from the Illumina Genome Analyzer platform contains 42.1 million short reads (1.47 billion bases) with good quality (85.2% Q20, 78.6% Q30 bytes). The EST sequencing approach captures partial human transcript information. Search terms: human EST, Illumina EST, gene discovery, human cDNA, expressed sequence discovery, supporting identification of novel human genes and transcripts.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina Genome Analyzer
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
3 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1473833795 reported
total reads 42109537 reported
n content pct 0.867 measured
pct q20 bases 85.2 measured
pct q30 bases 78.6 measured
gc content pct 52.1 measured
mean read length 35 measured
mean base quality 34 measured
adapter content pct 0.07 measured
duplication rate pct 11.69 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 78.6 measured ×1 43%
mean base quality 34 measured ×0.6 100%
adapter content pct 0.07 measured ×0.4 100%
duplication rate pct 11.69 measured ×0.4 100%
QC cost 34 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0