Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX021387

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

53/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This D. melanogaster WGS dataset from the Illumina Genome Analyzer II platform contains 19.9 million reads (2.99 billion bases) with extrapolated 21.4× coverage and good quality (82.6% Q20, 54.3% Q30 bytes). The dataset supports searches for Drosophila genomics, Genome Analyzer II, and moderate-depth WGS. SNP discovery is straightforward, though structural variant confidence may be limited.

Data type / assay
WGS
Organism
Drosophila melanogaster
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2991823950 reported
total reads 19945493 reported
mean coverage 21.4 extrapolated
n content pct 0.107 measured
pct q20 bases 82.6 measured
pct q30 bases 54.3 measured
gc content pct 44 measured
mean read length 75 measured
mean base quality 26 measured
adapter content pct 0 measured
duplication rate pct 8.01 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 53/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 21.4 extrapolated ×1.2 61%
pct q30 bases 54.3 measured ×1 0%
duplication rate pct 8.01 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 34 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0