Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRX021907

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Short-read WGS of Salvia miltiorrhiza (danshen plant) on Illumina Genome Analyzer with good quality (94.9% Q20, 91% Q30) and 8.6 million reads supports genome mapping and variant discovery in this medicinal plant. This dataset is useful for natural-product chemistry genomics and understanding the genetic basis of bioactive compound biosynthesis in traditional herbal species.

Data type / assay
WGS
Organism
Salvia miltiorrhiza
Instrument
Illumina Genome Analyzer
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1288110600 reported
total reads 8587404 reported
n content pct 0.002 measured
pct q20 bases 94.9 measured
pct q30 bases 91 measured
gc content pct 46.5 measured
mean read length 75 measured
mean base quality 32 measured
adapter content pct 0 measured
duplication rate pct 22.05 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91 measured ×1 100%
duplication rate pct 22.05 measured ×0.5 56%
adapter content pct 0 measured ×0.4 100%
QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0