← Dataset search
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
39/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Drosophila melanogaster
Instrument
Illumina Genome Analyzer
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
6 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
1878507936
reported
total reads
52180776
reported
mean coverage
13.4
extrapolated
n content pct
0.499
measured
pct q20 bases
84.2
measured
pct q30 bases
0
measured
gc content pct
42.5
measured
mean read length
36
measured
mean base quality
19.9
measured
adapter content pct
0
measured
duplication rate pct
3.88
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 39/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
13.4
extrapolated
×1.2
25%
pct q30 bases
0
measured
×1
0%
duplication rate pct
3.88
measured
×0.5
100%
adapter content pct
0
measured
×0.4
100%
QC cost
43 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0