Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRX026901

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Felis catus WGS dataset from the Illumina Genome Analyzer II platform contains 68.7 million reads (5.15 billion bases) with good quality (76% Q20, 45.2% Q30 bytes). The large read count from this feline genome supports SNP discovery. Search terms: feline genomics, Illumina Genome Analyzer II, cat breed sequencing, mammalian WGS, applicable to veterinary genetics and species comparative studies.

Data type / assay
WGS
Organism
Felis catus
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
8 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5153337525 reported
total reads 68711167 reported
n content pct 0.103 measured
pct q20 bases 76 measured
pct q30 bases 45.2 measured
gc content pct 45.5 measured
mean read length 75 measured
mean base quality 23.9 measured
adapter content pct 0.94 measured
duplication rate pct 0.87 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 45.2 measured ×1 0%
duplication rate pct 0.87 measured ×0.5 100%
adapter content pct 0.94 measured ×0.4 100%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0