Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

SRX026909

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Felis catus WGS dataset from the Illumina Genome Analyzer II platform contains 146 million reads (7.30 billion bases) with moderate quality (71.7% Q20, 44.2% Q30 bytes). The large read count supports SNP discovery in this mammalian genome. Search terms: feline genomics, cat WGS, Illumina Genome Analyzer II, comparative mammalian genomics, breed studies, enabling variant mapping in domestic carnivores.

Data type / assay
WGS
Organism
Felis catus
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
16 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 7298911450 reported
total reads 145978229 reported
n content pct 0.447 measured
pct q20 bases 71.7 measured
pct q30 bases 44.2 measured
gc content pct 42 measured
mean read length 50 measured
mean base quality 23 measured
adapter content pct 0.09 measured
duplication rate pct 0.15 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 44.2 measured ×1 0%
duplication rate pct 0.15 measured ×0.5 100%
adapter content pct 0.09 measured ×0.4 100%
QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0