SRX026910

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Felis catus WGS dataset from the Illumina Genome Analyzer II platform contains 135 million reads (10.12 billion bases) with good quality (85.4% Q20, 55.2% Q30 bytes). The very large read count supports SNP discovery in feline genomes. Search terms: feline genomics, cat WGS, Illumina Genome Analyzer II, mammalian comparative genomics, breed studies, applicable to veterinary genetics research.

Data type / assay

WGS

Organism

Felis catus

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

15 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 10123911975 reported

total reads 134985493 reported

n content pct 0.078 measured

pct q20 bases 85.4 measured

pct q30 bases 55.2 measured

gc content pct 43.6 measured

mean read length 75 measured

mean base quality 26.6 measured

adapter content pct 0.94 measured

duplication rate pct 0.64 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 55.2 measured ×1 0%

duplication rate pct 0.64 measured ×0.5 100%

adapter content pct 0.94 measured ×0.4 100%

QC cost 32 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0