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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
63/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Escherichia coli
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
7211774216
reported
total reads
47445883
reported
mean coverage
1567.8
extrapolated
n content pct
0.436
measured
pct q20 bases
61
measured
pct q30 bases
54.2
measured
gc content pct
49.6
measured
mean read length
76
measured
mean base quality
21.7
measured
adapter content pct
4.46
measured
duplication rate pct
11.45
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 63/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
1567.8
extrapolated
×1.2
100%
pct q30 bases
54.2
measured
×1
0%
duplication rate pct
11.45
measured
×0.5
89%
adapter content pct
4.46
measured
×0.4
75%
QC cost
35 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0