Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX039177

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

64/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Homo sapiens bulk RNA-Seq dataset from the Illumina Genome Analyzer II platform generates 10.6 million short reads (792 million bases) with excellent quality metrics (91.6% Q20, 87.1% Q30 bases, 0.049% N content). The transcriptome is searchable by human RNA-Seq, Genome Analyzer II, and should support discovery of gene expression patterns in the profiled tissue. The moderate read count and sample depth suggest utility for baseline expression characterization, though may require replication or pooling for comprehensive differential studies.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 792077175 reported
total reads 10561029 reported
n content pct 0.049 measured
pct q20 bases 91.6 measured
pct q30 bases 87.1 measured
gc content pct 49.7 measured
mean read length 75 measured
mean base quality 30.8 measured
adapter content pct 0 measured
duplication rate pct 78.21 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 64/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.1 measured ×1 86%
mean base quality 30.8 measured ×0.6 47%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 78.21 measured ×0.4 0%
QC cost 37 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0