Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX058293

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This D. melanogaster WGS dataset from the Illumina Genome Analyzer IIx platform contains 35.6 million reads (6.27 billion bases) with high extrapolated coverage (44.8×) and perfect base quality (100% Q20 and Q30 bases). The exceptional quality and near-44× depth enable comprehensive SNP and small indel discovery. Search terms: high-coverage Drosophila genomics, Genome Analyzer IIx, variant calling, reflecting the dataset's suitability for definitive sequence mapping projects.

Data type / assay
WGS
Organism
Drosophila melanogaster
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 6265747488 reported
total reads 35600838 reported
mean coverage 44.8 extrapolated
n content pct 0.044 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 43.1 measured
mean read length 100 measured
mean base quality 30 measured
adapter content pct 0.06 measured
duplication rate pct 1.34 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 44.8 extrapolated ×1.2 100%
pct q30 bases 100 measured ×1 100%
duplication rate pct 1.34 measured ×0.5 100%
adapter content pct 0.06 measured ×0.4 100%
QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0