Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX058340

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This D. melanogaster WGS dataset from the Illumina Genome Analyzer IIx platform contains 17.3 million reads (5.07 billion bases) with high extrapolated coverage (36.2×) and excellent quality (90.3% Q20, 82.1% Q30 bytes). The strong base quality and good coverage depth support reliable SNP discovery and basic structural variant detection. Searchable by Drosophila WGS, Genome Analyzer IIx, medium-high coverage genomics, offering solid utility for genomic studies.

Data type / assay
WGS
Organism
Drosophila melanogaster
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5065506208 reported
total reads 17347624 reported
mean coverage 36.2 extrapolated
n content pct 0.001 measured
pct q20 bases 90.3 measured
pct q30 bases 82.1 measured
gc content pct 42.9 measured
mean read length 146 measured
mean base quality 33.4 measured
adapter content pct 0.23 measured
duplication rate pct 0.5 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 36.2 extrapolated ×1.2 100%
pct q30 bases 82.1 measured ×1 61%
duplication rate pct 0.5 measured ×0.5 100%
adapter content pct 0.23 measured ×0.4 100%
QC cost 34 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0