Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRX058342

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

WGS of Drosophila melanogaster from Genome Analyzer IIx, 15.6M reads. Grade C (77/100) with low evidence strength (0.61); the limiting metric is extrapolated mean coverage of 17x (scored 41/100)—marginal depth for reliable variant calling. Measured Q30 (95.8%) is excellent, but low coverage is the critical constraint; coverage must be verified independently.

Data type / assay
WGS
Organism
Drosophila melanogaster
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2377631576 reported
total reads 15642313 reported
mean coverage 17 extrapolated
n content pct 0 measured
pct q20 bases 98.7 measured
pct q30 bases 95.8 measured
gc content pct 42.7 measured
mean read length 76 measured
mean base quality 37.9 measured
adapter content pct 0.01 measured
duplication rate pct 1.25 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 17 extrapolated ×1.2 41%
pct q30 bases 95.8 measured ×1 100%
duplication rate pct 1.25 measured ×0.5 100%
adapter content pct 0.01 measured ×0.4 100%
QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0