SRX058343

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Drosophila melanogaster WGS on Genome Analyzer IIx provides ~6.48 billion bases at 46.3x coverage with perfect quality (100% Q20/Q30). This exceptionally high-quality fly dataset is ideal for precision variant calling.

Data type / assay

WGS

Organism

Drosophila melanogaster

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 6482333088 reported

total reads 36831438 reported

mean coverage 46.3 extrapolated

n content pct 0.045 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 43.6 measured

mean read length 100 measured

mean base quality 30 measured

adapter content pct 0.07 measured

duplication rate pct 0.97 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 46.3 extrapolated ×1.2 100%

pct q30 bases 100 measured ×1 100%

duplication rate pct 0.97 measured ×0.5 100%

adapter content pct 0.07 measured ×0.4 100%

QC cost 46 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0