Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX058368

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Drosophila melanogaster WGS via Illumina Genome Analyzer IIx with flawless base quality (100% Q20/Q30) from 22M reads at 45.8× coverage. High-quality short-read sequencing suits fly variant discovery and population genetics, though moderate coverage may limit rare structural variant detection. Robust dataset for Drosophila SNP and indel studies without extensive post-processing.

Data type / assay
WGS
Organism
Drosophila melanogaster
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 6416818844 reported
total reads 21975407 reported
mean coverage 45.8 extrapolated
n content pct 0.63 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 43.2 measured
mean read length 146 measured
mean base quality 30 measured
adapter content pct 0.1 measured
duplication rate pct 0.23 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 45.8 extrapolated ×1.2 100%
pct q30 bases 100 measured ×1 100%
duplication rate pct 0.23 measured ×0.5 100%
adapter content pct 0.1 measured ×0.4 100%
QC cost 1.3 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0