SRX058373

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Deep, high-quality short-read WGS of Drosophila melanogaster using Illumina Genome Analyzer IIx with 39.1× coverage and superior quality metrics (96.7% Q20, 89.8% Q30) delivers exceptional sensitivity for detecting genetic variation. This well-powered dataset supports fine-grained analysis of polymorphisms, structural variants, and population-level genome features in this classic model organism.

Data type / assay

WGS

Organism

Drosophila melanogaster

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5476756384 reported

total reads 36031292 reported

mean coverage 39.1 extrapolated

n content pct 0.003 measured

pct q20 bases 96.7 measured

pct q30 bases 89.8 measured

gc content pct 41.7 measured

mean read length 76 measured

mean base quality 34.5 measured

adapter content pct 0.1 measured

duplication rate pct 0.75 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 39.1 extrapolated ×1.2 100%

pct q30 bases 89.8 measured ×1 99%

duplication rate pct 0.75 measured ×0.5 100%

adapter content pct 0.1 measured ×0.4 100%

QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0