Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRX058379

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This D. melanogaster WGS dataset from the Illumina Genome Analyzer IIx platform contains 32.1 million reads (4.88 billion bases) with high extrapolated coverage (34.9×) and excellent quality (97.3% Q20, 92.1% Q30 bytes). The outstanding base quality and good depth enable confident variant discovery. Search terms: high-quality Drosophila WGS, Genome Analyzer IIx, robust genomic mapping, ideal for comprehensive genetic studies.

Data type / assay
WGS
Organism
Drosophila melanogaster
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4884475616 reported
total reads 32134708 reported
mean coverage 34.9 extrapolated
n content pct 0.084 measured
pct q20 bases 97.3 measured
pct q30 bases 92.1 measured
gc content pct 41.5 measured
mean read length 76 measured
mean base quality 35.1 measured
adapter content pct 0.02 measured
duplication rate pct 0.72 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 34.9 extrapolated ×1.2 100%
pct q30 bases 92.1 measured ×1 100%
duplication rate pct 0.72 measured ×0.5 100%
adapter content pct 0.02 measured ×0.4 100%
QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0