Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

SRX058382

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This D. melanogaster WGS dataset from the Illumina Genome Analyzer IIx platform contains 37.5 million reads (6.60 billion bases) with high extrapolated coverage (47.2×) and near-perfect base quality (100% Q20 and Q30 bytes). The exceptional quality and depth enable sensitive detection of rare variants and complex genomic features. Search terms: ultra-high-quality Drosophila WGS, Genome Analyzer IIx, comprehensive variant discovery, reflecting this dataset's suitability for definitive genomic studies.

Data type / assay
WGS
Organism
Drosophila melanogaster
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 6601170928 reported
total reads 37506653 reported
mean coverage 47.2 extrapolated
n content pct 0.302 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 43.5 measured
mean read length 100 measured
mean base quality 30 measured
adapter content pct 0.11 measured
duplication rate pct 0.67 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 47.2 extrapolated ×1.2 100%
pct q30 bases 100 measured ×1 100%
duplication rate pct 0.67 measured ×0.5 100%
adapter content pct 0.11 measured ×0.4 100%
QC cost 34 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0