Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX093417

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

61/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 2000 bulk RNA-seq of Magallana gigas (oyster) generates ~16 million reads (~2.9 Gb) with moderate quality (87.2% Q20, 77.8% Q30), enabling mollusk-transcriptome profiling relevant to aquaculture. The dataset supports shellfish biology research. Researchers seeking mollusk transcriptomics will find this useful.

Data type / assay
bulk-RNA-seq
Organism
Magallana gigas
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2994577380 reported
total reads 16636541 reported
n content pct 0.006 measured
pct q20 bases 87.2 measured
pct q30 bases 77.8 measured
gc content pct 43.7 measured
mean read length 90 measured
mean base quality 30.8 measured
adapter content pct 0.06 measured
duplication rate pct 21.49 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 61/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 77.8 measured ×1 39%
mean base quality 30.8 measured ×0.6 47%
adapter content pct 0.06 measured ×0.4 100%
duplication rate pct 21.49 measured ×0.4 100%
QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0