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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
90/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Magallana gigas
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
4926574980
reported
total reads
27369861
reported
n content pct
0.005
measured
pct q20 bases
93.4
measured
pct q30 bases
86.4
measured
gc content pct
45.5
measured
mean read length
90
measured
mean base quality
33.3
measured
adapter content pct
0.13
measured
duplication rate pct
23.77
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 90/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
86.4
measured
×1
82%
mean base quality
33.3
measured
×0.6
88%
adapter content pct
0.13
measured
×0.4
100%
duplication rate pct
23.77
measured
×0.4
100%
QC cost
32 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0