Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRX093539

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This bulk RNA-Seq of Magallana gigas (Pacific oyster) on HiSeq 2000 spans 3.6 Gb with 20 million reads and excellent quality (95.5% Q20, 91.7% Q30), providing clean transcriptome data for this aquaculturally significant bivalve mollusk. The dataset enables gene-expression profiling during reproduction, stress responses, or development in this oyster species. Marine genomics and aquaculture studies investigating gene expression related to growth, immunity, or shell biomineralization can apply this shellfish RNA-seq dataset.

Data type / assay
bulk-RNA-seq
Organism
Magallana gigas
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3648277080 reported
total reads 20268206 reported
n content pct 0.001 measured
pct q20 bases 95.5 measured
pct q30 bases 91.7 measured
gc content pct 43.6 measured
mean read length 90 measured
mean base quality 35 measured
adapter content pct 0.11 measured
duplication rate pct 30.32 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.7 measured ×1 100%
mean base quality 35 measured ×0.6 100%
adapter content pct 0.11 measured ×0.4 100%
duplication rate pct 30.32 measured ×0.4 99%
QC cost 1.4 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0