Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRX101672

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This macaque (Macaca mulatta) RNA-Seq dataset on Illumina Genome Analyzer IIx reaches 27.3 million reads with pristine Q30 scores (100%), providing a high-fidelity primate transcriptome snapshot. The 4.1 Gb dataset is substantial enough for gene-expression quantification and isoform-level studies in this widely-used nonhuman primate model. Researchers seeking clean short-read expression data for comparative primate genomics will find the base-calling accuracy here valuable.

Data type / assay
bulk-RNA-seq
Organism
Macaca mulatta
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4101966000 reported
total reads 27346440 reported
n content pct 0.004 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 48.1 measured
mean read length 76 measured
mean base quality 30 measured
adapter content pct 0 measured
duplication rate pct 18.36 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%
mean base quality 30 measured ×0.6 33%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 18.36 measured ×0.4 100%
QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0