← Dataset search
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
41/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Salmonella enterica subsp. enterica serovar Montevideo str. 556152
Instrument
454 GS FLX Titanium
Platform
LS454
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
86980006
reported
total reads
155978
reported
n content pct
0.047
measured
pct q20 bases
37.7
measured
pct q30 bases
37.7
measured
gc content pct
52
measured
mean read length
357.1
measured
mean base quality
13.2
measured
adapter content pct
0
measured
duplication rate pct
15.77
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 41/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
37.7
measured
×1
0%
duplication rate pct
15.77
measured
×0.5
76%
adapter content pct
0
measured
×0.4
100%
QC cost
11 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0