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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
61/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
13340745456
reported
total reads
45070086
reported
mean coverage
4.3
extrapolated
n content pct
0.003
measured
pct q20 bases
98.4
measured
pct q30 bases
95.1
measured
gc content pct
40
measured
mean read length
148
measured
mean base quality
36.3
measured
adapter content pct
0.13
measured
duplication rate pct
0.39
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 61/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
4.3
extrapolated
×1.2
0%
pct q30 bases
95.1
measured
×1
100%
duplication rate pct
0.39
measured
×0.5
100%
adapter content pct
0.13
measured
×0.4
100%
QC cost
16 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0