Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRX106025

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

75/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This bulk RNA-Seq of Drosophila miranda on the Illumina Genome Analyzer II yielded perfect base-quality scores (100% Q20 and Q30) across 25.6 million reads, establishing an uncommonly clean transcriptome profile for this model organism. The dataset's 5.2 Gb depth enables confident detection of both abundant and moderately-expressed transcripts. Comparative transcriptomics studies leveraging this clean short-read RNA-seq with other Drosophila species can rely on minimal sequencing artifacts.

Data type / assay
bulk-RNA-seq
Organism
Drosophila miranda
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5174354432 reported
total reads 25615616 reported
n content pct 0.04 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 53.5 measured
mean read length 101 measured
mean base quality 30 measured
adapter content pct 10.51 measured
duplication rate pct 16.35 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 75/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%
mean base quality 30 measured ×0.6 33%
adapter content pct 10.51 measured ×0.4 53%
duplication rate pct 16.35 measured ×0.4 100%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0