SRX1092681

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

miRNA-seq of Oryza sativa from HiSeq 2500, 18M reads (49 bp). Grade B (84/100) with duplication of 73.98% (scored 2/100) is typical and expected for small-RNA libraries due to natural bias; measured Q30 of 97.2% and base quality of 38 are excellent. Duplication penalty is assay-inherent; otherwise high quality for miRNA quantification.

Data type / assay

bulk-RNA-seq

Organism

Oryza sativa Indica Group

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 879691561 reported

total reads 17952889 reported

n content pct 0.003 measured

pct q20 bases 99.1 measured

pct q30 bases 97.2 measured

gc content pct 44.8 measured

mean read length 49 measured

mean base quality 38 measured

adapter content pct 0 measured

duplication rate pct 73.98 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.2 measured ×1 100%

mean base quality 38 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 73.98 measured ×0.4 2%

QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0