Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRX1092754

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

miRNA-Seq from Oryza sativa Indica Group using an Illumina HiSeq 2500 with exceptional quality (99% Q20 bases, 96.8% Q30), specifically targeting small-RNA molecules rather than full transcriptome coverage. This dataset is well-suited for discovering microRNA-mediated gene regulation and expression profiling in this important rice subspecies, including studies of developmental timing and stress response pathways.

Data type / assay
bulk-RNA-seq
Organism
Oryza sativa Indica Group
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 893670379 reported
total reads 18238171 reported
n content pct 0.004 measured
pct q20 bases 99 measured
pct q30 bases 96.8 measured
gc content pct 46.1 measured
mean read length 49 measured
mean base quality 37.8 measured
adapter content pct 0 measured
duplication rate pct 62.85 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.8 measured ×1 100%
mean base quality 37.8 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 62.85 measured ×0.4 27%
QC cost 46 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0