Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX11061546

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

62/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This PacBio Sequel II long-read WGS of Homo sapiens provides ~25.5 Gb from ~1.6 million reads at minimal 8.2× coverage with high quality (98.9% Q20, 97.5% Q30), representing shallow long-read sequencing suitable only for targeted region analysis or structural-variant screening. The low coverage limits whole-genome applications. Researchers should use this for targeted rather than genome-wide studies.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
Sequel II
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 25542316279 reported
total reads 1637714 reported
mean coverage 8.2 extrapolated
n content pct 0 measured
pct q20 bases 98.9 measured
pct q30 bases 97.5 measured
gc content pct 40.6 measured
mean read length 15511.9 measured
mean base quality 82.1 measured
adapter content pct 0 measured
duplication rate pct 1.43 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 62/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 8.2 extrapolated ×1.2 1%
pct q30 bases 97.5 measured ×1 100%
duplication rate pct 1.43 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0