Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRX111557

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This third Solanum lycopersicum RNA-Seq on Genome Analyzer IIx covers 1.7 Gb with 28 million reads and perfect Q30 (100%), joining the high-quality tomato transcriptome collection. The consistent pristine quality across multiple tomato datasets enables meta-analyses and comparative transcriptomics confidence. Large-scale plant transcriptomics investigations can aggregate these clean tomato short-read libraries for comprehensive gene-expression atlases.

Data type / assay
bulk-RNA-seq
Organism
Solanum lycopersicum
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1702107120 reported
total reads 28368452 reported
n content pct 0.137 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 43.2 measured
mean read length 60 measured
mean base quality 30 measured
adapter content pct 1.3 measured
duplication rate pct 9.8 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%
mean base quality 30 measured ×0.6 33%
adapter content pct 1.3 measured ×0.4 100%
duplication rate pct 9.8 measured ×0.4 100%
QC cost 1.2 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0