Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRX111558

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Solanum lycopersicum (tomato) bulk RNA-seq via Illumina Genome Analyzer IIx with flawless base quality (100% Q20 and Q30) from 11.3M reads. Despite modest read count, pristine quality enables confident transcript identification and expression profiling in this agricultural crop. Excellent-quality short-read RNA-seq suitable for tomato fruit development, disease-response transcriptomics, and quality-trait gene discovery.

Data type / assay
bulk-RNA-seq
Organism
Solanum lycopersicum
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1383945186 reported
total reads 11343813 reported
n content pct 0.046 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 44.1 measured
mean read length 61 measured
mean base quality 30 measured
adapter content pct 1.22 measured
duplication rate pct 10.09 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%
mean base quality 30 measured ×0.6 33%
adapter content pct 1.22 measured ×0.4 100%
duplication rate pct 10.09 measured ×0.4 100%
QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0