SRX111848

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-Seq of Solanum lycopersicum (tomato) on Illumina Genome Analyzer IIx with 12.4 million reads and perfect quality (100% Q20 and Q30) enables high-fidelity transcriptome profiling in an important agricultural crop. The pristine dataset supports plant developmental biology, fruit ripening, and secondary-metabolite pathway studies in tomato.

Data type / assay

bulk-RNA-seq

Organism

Solanum lycopersicum

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1355644881 reported

total reads 12437109 reported

n content pct 0.121 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 44 measured

mean read length 61 measured

mean base quality 30 measured

adapter content pct 1.64 measured

duplication rate pct 10.14 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 1.64 measured ×0.4 100%

duplication rate pct 10.14 measured ×0.4 100%

QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0