Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

SRX112027

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

72/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Macaca mulatta WGS on Genome Analyzer IIx spans 61 Gb across 14 files with 407 million reads and 21.1× extrapolated coverage, though showing elevated N-content (1.583%) and moderate Q20 (85.6%), suggesting some sequencing or library complexity. The substantial depth compensates for modest quality, enabling variant discovery in this important nonhuman primate model. Primate genomics and comparative studies can use this macaque WGS for understanding genetic variation and population structure.

Data type / assay
WGS
Organism
Macaca mulatta
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
14 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 61081866450 reported
total reads 407212443 reported
mean coverage 21.1 extrapolated
n content pct 1.583 measured
pct q20 bases 85.6 measured
pct q30 bases 82.2 measured
gc content pct 39.3 measured
mean read length 75 measured
mean base quality 32.9 measured
adapter content pct 0 measured
duplication rate pct 7.99 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 72/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 21.1 extrapolated ×1.2 60%
pct q30 bases 82.2 measured ×1 61%
duplication rate pct 7.99 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 44 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0