SRX115875

ENA first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

82/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Centruroides noxius bulk RNA-seq via 454 GS 20 EST yields ~121.5 million bases with excellent quality (99.8% Q20/Q30, 32.9% GC). This scorpion dataset represents well-sequenced 454 EST data.

Data type / assay

bulk-RNA-seq

Organism

Centruroides noxius

Instrument

454 GS 20

Platform

LS454

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 121506016 reported

total reads 1070123 reported

n content pct 0.033 measured

pct q20 bases 99.8 measured

pct q30 bases 99.8 measured

gc content pct 32.9 measured

mean read length 100.4 measured

mean base quality 30 measured

adapter content pct 0 measured

duplication rate pct 33.14 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 82/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 99.8 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 33.14 measured ×0.4 93%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0