Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX12524232

ENA first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This second Aspergillus niger RNA-Seq on BGISEQ-500 covers 6.4 Gb with 42.4 million reads at comparable quality (95.4% Q20, 85% Q30), offering a biological replicate or condition-specific expression snapshot in this industrially exploited fungus. The dataset pair enables robust differential-expression analysis and validates gene-expression patterns across growth conditions. Fungal transcriptomics studies investigating enzyme production, development, or stress responses can integrate both BGISEQ datasets for deeper mechanistic insights.

Data type / assay
bulk-RNA-seq
Organism
Aspergillus niger
Instrument
BGISEQ-500
Platform
BGISEQ
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 6361102500 reported
total reads 42407350 reported
n content pct 0.001 measured
pct q20 bases 95.4 measured
pct q30 bases 85 measured
gc content pct 54.8 measured
mean read length 150 measured
mean base quality 33.9 measured
adapter content pct 0 measured
duplication rate pct 27.29 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85 measured ×1 75%
mean base quality 33.9 measured ×0.6 98%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 27.29 measured ×0.4 100%
QC cost 44 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0