SRX1254413

SRA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Homo sapiens miRNA-seq via HiSeq 2000 captures ~916.7 million bases with good quality (93.6% Q20, 53.5% GC), enabling human miRNA profiling. This specialized dataset supports small RNA biology.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 916773615 reported

total reads 31967082 reported

n content pct 0 measured

pct q20 bases 93.6 measured

pct q30 bases 90.7 measured

gc content pct 53.5 measured

mean read length 28.5 measured

mean base quality 35.9 measured

adapter content pct 0 measured

duplication rate pct 35.53 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.7 measured ×1 100%

mean base quality 35.9 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 35.53 measured ×0.4 88%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0