SRX1434947

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

62/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Arabidopsis thaliana WGS via MiSeq provides ~1.48 billion bases at 11x coverage with excellent quality (99.2% Q20), enabling plant genomics. This model plant dataset supports functional analysis.

Data type / assay

WGS

Organism

Arabidopsis thaliana

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

2 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1484026662 reported

total reads 21047515 reported

mean coverage 11 extrapolated

n content pct 0.014 measured

pct q20 bases 99.2 measured

pct q30 bases 96.5 measured

gc content pct 38.5 measured

mean read length 36 measured

mean base quality 35.7 measured

adapter content pct 0 measured

duplication rate pct 16.76 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 62/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 11 extrapolated ×1.2 14%

pct q30 bases 96.5 measured ×1 100%

duplication rate pct 16.76 measured ×0.5 73%

adapter content pct 0 measured ×0.4 100%

QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0