Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRX1447229

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-Seq of Lamellibrachia sp. GA27P, a tubeworm colonizing hydrothermal vents, generated on Illumina Genome Analyzer II with good quality (92.9% Q20, 84.5% Q30) and measures gene expression in this extremophile environment. The dataset supports studies of chemosynthetic metabolism, symbiotic interactions, and stress-adaptation mechanisms in deep-sea organisms through short-read transcriptome profiling.

Data type / assay
bulk-RNA-seq
Organism
Lamellibrachia sp. GA27P
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3077117611 reported
total reads 30466511 reported
n content pct 0.009 measured
pct q20 bases 92.9 measured
pct q30 bases 84.5 measured
gc content pct 51.1 measured
mean read length 101 measured
mean base quality 33.5 measured
adapter content pct 2.9 measured
duplication rate pct 61.75 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.5 measured ×1 73%
mean base quality 33.5 measured ×0.6 92%
adapter content pct 2.9 measured ×0.4 95%
duplication rate pct 61.75 measured ×0.4 29%
QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0