Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRX1535507

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

72/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina MiSeq bulk RNA-seq of anaerobic-digester metagenome generates ~3.8 million reads (~1.1 Gb) with excellent quality (97.8% Q20, 96.9% Q30), enabling environmental metatranscriptomics profiling of microbial communities. The dataset supports biogas and anaerobic-digestion research. Researchers seeking environmental genomics or metagenomics will find this useful.

Data type / assay
bulk-RNA-seq
Organism
anaerobic digester metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1149501790 reported
total reads 3816684 reported
n content pct 0 measured
pct q20 bases 97.8 measured
pct q30 bases 96.9 measured
gc content pct 53.3 measured
mean read length 150.5 measured
mean base quality 37.3 measured
adapter content pct 28.8 measured
duplication rate pct 59.88 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 72/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.9 measured ×1 100%
mean base quality 37.3 measured ×0.6 100%
adapter content pct 28.8 measured ×0.4 0%
duplication rate pct 59.88 measured ×0.4 34%
QC cost 1.2 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0