SRX1556764

SRA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Illumina HiSeq 2500 WGS of Hordeum vulgare (barley) provides ~134.1 Gb from ~526 million reads at exceptional volume with very high quality (98.6% Q20, 94.7% Q30), enabling comprehensive plant-genome assembly and variant discovery for this important grain crop. The enormous dataset supports reference-genome and crop-breeding applications. Researchers seeking high-coverage plant genomics will find this highly valuable.

Data type / assay

WGS

Organism

Hordeum vulgare

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

6 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 134163866496 reported

total reads 526580183 reported

n content pct 0.001 measured

pct q20 bases 98.6 measured

pct q30 bases 94.7 measured

gc content pct 44.8 measured

mean read length 150 measured

mean base quality 35.8 measured

adapter content pct 0.01 measured

duplication rate pct 2.25 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.7 measured ×1 100%

duplication rate pct 2.25 measured ×0.5 100%

adapter content pct 0.01 measured ×0.4 100%

QC cost 1.3 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0